module runner.zarp_runner
¶
Infer missing sample metadata with HTSinfer.
Global Variables¶
- map_model_to_zarp
- map_zarp_to_model
class SampleRunnerZARP
¶
Infer metadata with HTSinfer.
Args:
records
: PandasDataFrame
object.config
:Config
object.
Attributes:
records
: PandasDataFrame
object.config
:Config
object.
method process
¶
process(
loc: Path = PosixPath('/home/runner/work/zarp-cli/zarp-cli'),
workflow: Path = PosixPath('/home/runner/work/zarp-cli/zarp-cli/Snakefile')
) → DataFrame
Infer metadata with HTSinfer.
Args:
loc
: Working directory. Data may be located within child directories. Defaults to current working directory.workflow
: Path to Snakemake workflow for running HTSinfer. Defaults toSnakefile
in current working directory.
Returns: Dataframe with inferred sample metadata.