ZARP

Welcome to the ZARP documentation pages!

ZARP is a Snakemake workflow ...

TODO: Complete intro/summary section

NOTES TO SELF:

• Include references in /includes/references.md
• Include abbreviations in includes/abbreviations.md (example: EAWNKWIMPR)
• Include emojis (example: )
• Check out the ZARP-cli docs pages for inspiration.
• Check out MKDocs and Material for MkDocs docs for more info

How does it work?

Briefly, when a ZARP run is triggered, ...

TODO: Complete section

How to cite

If you use ZARP in your work, please kindly cite the following article:

ZARP: A user-friendly and versatile RNA-seq analysis workflow
Maria Katsantoni, Foivos Gypas, Christina J. Herrmann, Dominik Burri, Maciej Bak, Paula Iborra, Krish Agarwal, Meric Ataman, Máté Balajti, Noè Pozzan, Niels Schlusser, Youngbin Moon, Aleksei Mironov, Anastasiya Börsch, Mihaela Zavolan, Alexander Kanitz
F1000Research 2024, 13:533
https://doi.org/10.12688/f1000research.149237.1

Training materials

Coming soon...

Info materials

Poster

Reach out

There are several ways to get in touch with us:

• For ZARP usage questions, please use the ZARP Q&A forum (requires GitHub registration)
• For feature suggestions and bug reports, please use either the ZARP or ZARP-cli issue tracker (requires GitHub registration)
• For any other requests, please reach out to us via email

Contributors welcome!

Open source contributors are always welcome, for ZARP, ZARP-cli or any other of the Zavolab projects. Simply reach out by email to schedule an onboarding call.

Acknowledgements